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Publications

Shrestha AMS, Asai K, Frith M, Richard H.
A new framework for the identification of Genomic Structural Variant using Joint Alignment of Reads.
Nucleic Acids Research. (In Press).
Krakau S, Richard H, Marsico A.
PureCLIP: Capturing Target-Specific protein-RNA Interaction Footprints from Single-Nucleotide CLIP-Seq Data.
Genome Biology. (In Press).
Matuszyńska A, Moejes F, Adhikari K, Bassi R, Cariti F, Cogne G, Dikaios I, Falciatore A, Finazzi G, Flori S, Goldschmidt-Clermont M, Magni S, Maguire J, Le Monnier A, Mueller K, Poolman M, Singh D, Spelberg S, Stella GR, Succurro A, Taddei L, Urbain B, Villanova V, Zabke C, Ebenhöh O.
A systems-wide understanding of the photosynthetic acclimation in algae and higher plants - retrospection and perspectives.
J Exp Bot. (In Press).
Villanova V, Fortunato AE, Singh D, Dal Bo D, Conte M, Obata T, Jouhet J, Fernie AR, Marechal E, Falciatore A, Pagliardini J, Le Monnier J, Poolman M, G C, Petroutsos D, Finazzi G.
Investigating mixotrophic metabolism in the model diatom Phaeodactylum tricornutum.
Phil. Trans. R. Soc. B. (In Press).
Tian M, Ye-Lehmann S
Engineering light sensitive NMDARs.
in Methods in Molecular Biology. Edited by: Szepetowski P. and Burnashev N. John Wiley & Sons, Inc. (In Press)
Tian M, Wang Q, Ye-Lehmann S
Elucidating GPCR structural function relationship through genetic code expansion.
in Topics in Medicinal Chemistry. Edited by: Granier S. and Lebon G. Springer. (In Press)
Vakirlis NN, Hebert AS, Opulente DA, Achaz G, Hittinger CTodd, Fischer G, Coon JJ, Lafontaine I.
A molecular portrait of de novo genes in yeasts.
Mol Biol Evol. (2017).
Cocco S, Feinauer C, Figliuzzi M, Monasson R, Weigt M.
Inverse Statistical Physics of Protein Sequences: A Key Issues Review.
Rep. Prog. Phys. (2017).
Couce A, Caudwell LViraphong, Feinauer C, Hindré T, Feugeas J-P, Weigt M, Lenski RE, Schneider D, Tenaillon O.
Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria.
Proceedings of the National Academy of Sciences. 114, pp.E9026-E9035 (2017).
Szurmant H, Weigt M.
Inter-residue, inter-protein and inter-family coevolution: bridging the scales.
Curr Opin Struct Biol. 50, pp.26-32 (2017).
Dequeker C, Laine E, Carbone A.
INTerface Builder: a fast protein-protein interface reconstruction tool.
J Chem Inf Model. (2017).
Lidsky PV, Andino R, IM Rouzine.
Variability in viral pathogenesis: modeling the dynamic of acute and persistent infections.
Curr Opin Virol. 23, pp.120-124 (2017).
Nadalin F, Carbone A.
Protein-protein interaction specificity is captured by contact preferences and interface composition.
Bioinformatics. (2017).
Nayeem SM, Oteri F, Baaden M, Deep S.
Residues of Alpha Helix H3 Determine Distinctive Features of Transforming Growth Factor β3.
The Journal of Physical Chemistry B. 121, pp.5483-5498 (2017).
De Lazzari E, Grilli J, Maslov S, Cosentino Lagomarsino M.
Family-specific scaling laws in bacterial genomes.
Nucleic Acid Research. (2017).

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