Specialty Course Name Acronym level Description
Computational Biology Sequence analysis and word statistics SBASS Master
Phylogeny PHYLO Master
Microarray & RNA-Seq analysis Master Course for a summer school
NGS data analysis PHYG
files for the tutorials
Statistics Inferential statistics and Hypothesis testing LI323 bachelor
Classification and Pattern matching SCLASS Master
Computer Science Introduction to Algorithms and Python programming LBM - 1I001 Bachelor Course for the Biology and Mathematics bachelor program (UPMC-Roscoff)
Algorithms and Data structures LI216 Bachelor
Structures discrètes LI214 Bachelor
C programming LI215 Bachelor

Students Supervision

PhD Students
  • (Oct. 2017-) Laurent David (joint with Alessandra Carbone):
    Predicting protein interactions from metagenomic data
  • (Oct. 2017-) Robert Clerc (joint with Laurent Mesnard, MD PhD, Tenon Hospital):
    Refinement of the allogenomics concept in renal transplantation
  • (2010-2014) Bogdan Mirauta (joint with Pierre Nicolas, INRA Jouy en Josas):
    Estimating Transcriptional Rates from RNA-Seq data
  • (2007-10) Marcel H. Schulz (joint with M. Vingron MPI Molecular Genetics, K. Reinert Free University, Berlin):
Master Students
  • (April-September 2014) Adel Ait-Amlat (joint with E. Laine): Phylogenetic reconstruction of transcript isoform evolutions
  • (February-August 2013) Madjid Bessoul: Inferring methylation level from bisulfite sequencing experiments
  • (April-September 2010): Bogdan Mirauta: Inferring transcriptional rate with sequential Monte-Carlo methods.
  • Master projects (3 months):
    • Analysis of bisulfite sequencing data
    • Correction of sequencing errors with a suffix tree approach
    • Annotation of proteins with variable order markov chains
    • Evaluating various segmentation methods for the analysis of transcriptome data