MetaSUB project Paris Hub

• Mapping the microbiome of mass transit systems in the world, http://www.metasub.org
• Functional annotation of metagenomes
• Antimicrobial Resistance Marker Tracking

Next generation sequencing data alignment (Methods)

• JRA: Joint Split Alignment of reads, with A. MS. Shrestha, M. Frith and K. Asai
• Fiona: Automatic read error correction from genome sequencing data with M. Schulz, M. Holtgrewe, D. Weese and K. Reinert
• Genome/exome resequencing

Transcriptome sequencing data. (RNA-Seq statistical analysis)

• Parseq: Reconstruction of the transcriptional landscape, with B. Mirauta and P. Nicolas
• Annotation of Alternative Splicing events
• Analysis of small non-coding RNA (for instance in P. tricornutum)
• Analysis of methylation data (BSHMM, M. Bessoul and B. Mirauta)

Words statistics (Monkey typing)