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Carbone A*, Mathelier A. Environmental and Physiological Insights from Microbial Genome Sequences. Elements of Computational Systems Biology. pp.325–339 (2008). |
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Carbone A*. Codon bias is a major factor explaining phage evolution in translationally biased hosts. J Mol Evol. 66(3), pp.210-23 (2008). |
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Baussand J, Carbone A*. Inconsistent distances in substitution matrices can be avoided by properly handling hydrophobic residues. Evol Bioinform Online. 4, pp.255-61 (2008). |
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Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, Schmidt D, O'Keeffe S, Haas S, Vingron M, Lehrach H, Yaspo M-L. A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science. 321(5891), pp.956-60 (2008). |
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Baussand J, Carbone A*. Metagénomique bactérienne et virale - nouvelles définitions d'espace microbien et nouveaux défis algorithmiques. Technique et Sciences Informatiques, special issue on "Modeling, simulations in postgenomics", Hérmes. (2007). |
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Breton J, Bart-Delabesse E, Biligui S, Carbone A*, Seiller X, Okome-Nkoumou M, Nzamba C, Kombila M, Accoceberry I, Thellier M. New Highly Divergent rRNA Sequence among Biodiverse Genotypes of Enterocytozoon bieneusi Strains Isolated from Humans in Gabon and Cameroon. Journal of Clinical Microbiology. 45, pp.2580-2589 (2007). |
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Carbone A* Adaptation studied with the self-consistent codon index: genomic spaces, metabolic network comparison, minimal gene sets and viral classification. in Proceedings of the Evry Spring School on Modelling Complex Biological Systems in the Context of Genomics. Genopole, Evry. EDP Sciences. (2007) |
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Baussand J, Deremble C, Carbone A*. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins. Proteins. 67(3), pp.695-708 (2007). |
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Sacquin-Mora S, Lavery R, Trojan LA, Carbone A* Une opération de docking croisé à grande échelle pour la détection de partenaires protéiques potentiels. in Proceedings of the workshop "Mathématiques et Interactions". Paris France. Institut Henri Poincaré. (2006) |
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Carbone A*. Computational prediction of genomic functional cores specific to different microbes. J Mol Evol. 63(6), pp.733-46 (2006). |
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Carbone A*. Pathways of deduction. Geometries of nature, living systems, human cognition - New Interactions of Mathematics with Natural Sciences and Humanities. (2005). |
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Carbone A*, Pierce N (Eds.)DNA Computing. Proceedings of the 11th International Workshop on DNA Computing - DNA11. London (ON, Canada). LNCS 3892, Springer. (2005). |
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Miele V, Bourguignon P-Y, Robelin D, Nuel G, Richard H. seq++: analyzing biological sequences with a range of Markov-related models. Bioinformatics. 21, pp.2783-2784 (2005). |
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Carbone A*. Revisiting the codon adaptation index from a whole-genome perspective: gene expression, codon bias, and metabolic networks in the context of genomes comparison. Handelingen van de Koninklijke Vlaamse Academie van Belgie voor Wetenschappen en Kunsten. (2005). |
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Carbone A*, Képès F, Zinovyev A. Codon bias signatures, organization of microorganisms in codon space, and lifestyle. Mol Biol Evol. 22(3), pp.547-61 (2005). |
