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MUM&Co is a bash script that uses Whole Genome Alignment information provided by MUMmer (v3 and v4) to detect structural variations including deletions, insertions, reciprocal translocations and inversions.

A tool to detect clusters of the coevolving positions in a multiple sequence alignment of highly conserved protein sequences

Coevolution in OVerlapped sequences by Tree analysis (COVTree) is a web server providing the online analysis of coevolving amino-acid pairs in overlapping genes, where residues might be located inside or outside the overlapping region.

A method to identify highly sensitive residues and predicts deleterious mutations.

Co-evolution analysis of the envelope glycoproteins E1 and E2 of the Hepatitis C Virus (HCV)