|
Carbone A*, Képès F, Zinovyev A. Codon bias signatures, organization of microorganisms in codon space, and lifestyle. Mol Biol Evol. 22(3), pp.547-61 (2005). |
|
Carbone A*, Madden R. Insights on the evolution of metabolic networks of unicellular translationally biased organisms from transcriptomic data and sequence analysis. J Mol Evol. 61(4), pp.456-69 (2005). |
|
Carbone A*, Mao C, Constantinou PE, Ding B, Kopatsch J, Sherman WB, Seeman NC. 3D fractal DNA assembly from coding, geometry and protection. Natural Computing. 3, pp.235–252 (2004). |
|
Carbone A*, Seeman NC Molecular tiling and DNA self-assembly. in Aspects of Molecular Computing. Springer. pp. 61–83 (2004) |
|
Bourgine P, Carbone A*, Gromov M, Képès F (Eds.)Macromolecular Interplay and Traffic on DNA. ComPlexUs. Basel. S. Karger AG. (2003). |
|
Bourgine P, Carbone A*, Gromov M, Képès F (Eds.)Macromolecular Networks, a collection of articles on the theme. ComPlexUs. Kluwer. (2003). |
|
Carbone A*, Gromov M. Functional labels and syntactic entropy on DNA strings and proteins. Theoretical computer science. 303, pp.35–51 (2003). |
|
Carbone A* Cooperativity and symmetry at biological scales. in GROUP-24: Physical and Mathematical Aspects of Symmetries (Proceedings of the 24th International Colloquium on Group Theoretical Methods in Physics, Paris, 15-20 Juillet 2002), Institute of Physics. Conference Series Number 173, Bristol and Philadelphia. Institute of Physics Publishing. pp. 51-60 (2003) |
|
Carbone A*, Seeman NC. Coding and geometrical shapes in nanostructures: a fractal DNA-assembly. Natural Computing. 2, pp.133–151 (2003). |
|
Mishra B, Daruwala R-S, Zhou Y, Ugel N, Policriti A, Antoniotti M, Paxia S, Rejali M, Rudra A, Cherepinsky V, Silver N, Casey W, Piazza C, Simeoni M, Barbano P, Spivak M, Feng J, Gill O, Venkatesh M, Cheng F, Sun B, Ioniata I, Anantharaman T, E Hubbard JAlbert, Pnueli A, Harel D, Chandru V, Hariharan R, Wigler M, Park F, Lin S-C, Lazebnik Y, Winkler F, Cantor CR, Carbone A*, Gromov M. A sense of life: computational and experimental investigations with models of biochemical and evolutionary processes. OMICS. 7(3), pp.253-68 (2003). |
|
Robelin D, Richard H, Prum B. SIC: A tool to detect short inverted segments in a biological sequence. Nucleic Acids Res. 31(13), pp.3669-71 (2003). |
|
Carbone A*, Zinovyev A, Képès F. Codon adaptation index as a measure of dominating codon bias. Bioinformatics. 19(16), pp.2005-15 (2003). |
|
Richard H, Nuel G. SPA: Simple web tool to assess statistical significance of DNA patterns. Nucleic Acids Res. 31(13), pp.3679-81 (2003). |
|
Carbone A*, Seeman NC. A route to fractal DNA-assembly. Natural Computing. 1, pp.469–480 (2002). |
|
Carbone A*, Seeman NC. Circuits and programmable self-assembling DNA structures. Proc Natl Acad Sci U S A. 99(20), pp.12577-82 (2002). |
