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Bradde S, Weigt M, Braunstein A, Zecchina R, Tria F, Mahmoudi H. Aligning graphs and finding substructures by message passing. Europhys. Lett. . 89(37009), (2010). |
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Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R. Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. BMC Bioinformatics. 11, pp.355 (2010). |
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Weigt M, White RA, Szurmant H, Hoch JA, Hwa T. Identification of direct residue contacts in protein-protein interaction by message passing. Proc Natl Acad Sci U S A. 106(1), pp.67-72 (2009). |
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Schug A, Weigt M, Onuchic JN, Hwa T, Szurmant H. High-resolution protein complexes from integrating genomic information with molecular simulation. Proc Natl Acad Sci U S A. 106(52), pp.22124-9 (2009). |
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Costa J, Bernardes JS, Santos V, Zaverucha G Remote Homology Detection Through Discriminative Statistical Relational Learning. in The European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases. (2008) |
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Braunstein A, Pagnani A, Weigt M, Zecchina R. Inference algorithms for gene networks: a statistical mechanics analysis. Journal of Statistical Mechanics: Theory and Experiment. 2008, pp.P12001 (2008). |
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Bernardes JS, Dávila AMR, Costa VS, Zaverucha G. Improving model construction of profile HMMs for remote homology detection through structural alignment. BMC Bioinformatics. 8, pp.435 (2007). |
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Leone M, Weigt M. Clustering by soft-constraint affinity propagation: applications to gene-expression data. Bioinformatics. 23(20), pp.2708-15 (2007). |
