You are here
Martin Weigt
Primary tabs
Found 48 results
Filters: Author is Carron, L [Clear All Filters]
Direct coevolutionary couplings reflect biophysical residue interactions in proteins. The Journal of Chemical Physics. 145, pp.174102-17 (2016).
. Improving landscape inference by integrating heterogeneous data in the inverse Ising problem. Sci. Rep. 6, 37812, (2016).
. Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp Operon. PLoS ONE. 11, pp.1-18 (2016).
. Simultaneous identification of specifically interacting paralogs and inter-protein contacts by Direct-Coupling Analysis. Proc. Natl. Acad. Sci. 113(43), pp.12186-12191 (2016).
. Coevolutionary landscape inference and the context-dependence of mutations in beta-lactamase TEM-1. Mol Biol Evol. 33(1), pp.268-280 (2015).
. Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction. Nucleic Acids Res. 43(21), pp.10444-10455 (2015).
. Direct Coupling Analysis for Protein Contact Prediction. in Methods in Molecular Biology, Protein Structure Prediction. 1137, Springer New York. pp. 55-70 (2014)
Fast and Accurate Multivariate Gaussian Modeling of Protein Families: Predicting Residue Contacts and Protein-Interaction Partners. (Eds.). PLoS ONE. 9, pp.e92721 (2014).
. From principal component to direct coupling analysis of coevolution in proteins: low-eigenvalue modes are needed for structure prediction. PLoS Comput Biol. 9(8), pp.e1003176 (2013).
. Genetic covariance. in Brenner's Encyclopedia of Genetics, 2nd edition. (2013)
Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models. Phys Rev E Stat Nonlin Soft Matter Phys. 87(1), pp.012707 (2013).
. Inference of Hopfield-Potts patterns from covariation in protein families: calculation and statistical error bars. in Journal of Physics: Conference Series. 473, IOP Publishing. p. 012010 (2013)
Perturbation biology: inferring signaling networks in cellular systems. PLoS Comput Biol. 9(12), pp.e1003290 (2013).
. Genomics-aided structure prediction. Proc Natl Acad Sci U S A. 109(26), pp.10340-5 (2012).
. Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis. Proc Natl Acad Sci U S A. 109(26), pp.E1733-42 (2012).
. Direct-coupling analysis of residue coevolution captures native contacts across many protein families. Proceedings of the National Academy of Sciences. 108, pp.E1293-E1301 (2011).
. Dissecting the Specificity of Protein-Protein Interaction in Bacterial Two-Component Signaling: Orphans and Crosstalks. (Eds.). PLoS One. 6, pp.e19729 (2011).
. Aligning graphs and finding substructures by message passing. Europhys. Lett. . 89(37009), (2010).
. Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. BMC Bioinformatics. 11, pp.355 (2010).
. High-resolution protein complexes from integrating genomic information with molecular simulation. Proc Natl Acad Sci U S A. 106(52), pp.22124-9 (2009).
. Identification of direct residue contacts in protein-protein interaction by message passing. Proc Natl Acad Sci U S A. 106(1), pp.67-72 (2009).
. Inference algorithms for gene networks: a statistical mechanics analysis. Journal of Statistical Mechanics: Theory and Experiment. 2008, pp.P12001 (2008).
. Clustering by soft-constraint affinity propagation: applications to gene-expression data. Bioinformatics. 23(20), pp.2708-15 (2007).
.