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Alessandra Carbone
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Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis. Cell Reports. (In Press).
. Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association. Environ Res. 207, pp.112183 (2022).
. Crystal structure of chloroplast fructose-1,6-bisphosphate aldolase from the green alga Chlamydomonas reinhardtii. Journal of Structural Biology. (2022).
. Deep Local Analysis evaluates protein docking conformations with locally oriented cubes. Bioinformatics. (2022).
. From complete cross-docking to partners identification and binding sites predictions. PLOS Computational Biology. 18(1), (2022).
. iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families. Nucleic Acids Research. (2022).
. Multiple probabilistic models extract features from protein sequence data and resolve functional diversity of very different protein families. Molecular Biology and Evolution. 39(4), (2022).
. Soft disorder modulates the assembly path of protein complexes. PLoS Comput Biol. 18(11), pp.e1010713 (2022).
. The complexity of protein interactions unravelled from structural disorder. PLoS Computational Biology. 17(1), (2021).
. A fusion peptide in preS1 and the human protein-disulfide isomerase ERp57 are involved in HBV membrane fusion process. eLife. (2021).
. . MyCLADE: a multi-source domain annotation server for sequence functional exploration. Nucleic Acids Research. (2021).
. Coevolution analysis of amino-acids reveals diversified drug resistance solutions in viral sequences: a case study of hepatitis B virus. Virus Evolution. 6(1), (2020).
. COVTree: Coevolution in OVerlapped sequences by Tree analysis server. Nucleic Acids Research. (2020).
. Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties. PLoS Computational Biology. 16(2), (2020).
. NCIPLOT and the analysis of noncovalent interactions using the reduced density gradient. WIREs Computational Molecular Science. (2020).
. NCIPLOT4: fast, robust and quantitative analysis of noncovalent interactions. Journal of Chemical Theory and Computation. pp.4150–4158 (2020).
. Phylogenetic reconstruction based on synteny block and gene adjacencies. Molecular Biology and Evolution. 37(9), pp.2747–2762 (2020).
. Predicting substitutions to modulate disorder and stability in coiled-coils. BMC Bioinformatics. 21(573 ), (2020).
. Targeted domain assembly for fast functional profiling of metagenomic datasets with S3A. Bioinformatics. (2020).
. Blind prediction of homo- and hetero- protein complexes: The CASP13-CAPRI experiment. Proteins: Structure, Function, and BioinformaticsProteins: Structure, Function, and BioinformaticsProteins. (ja), (2019).
. Decrypting protein surfaces by combining evolution, geometry and molecular docking. Proteins. (2019).
. GEMME: A Simple and Fast Global Epistatic Model Predicting Mutational Effects. Molecular Biology and Evolution. (2019).
. Hidden partners: Using cross-docking calculations to predict binding sites for proteins with multiple interactions. PROTEINS: Structure, Function, and Bioinformatics. (2018).
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