Alessandra Carbone

Sacquin-Mora S, Lavery R, Trojan LA, Carbone A* Une opération de docking croisé à grande échelle pour la détection de partenaires protéiques potentiels. in Proceedings of the workshop "Mathématiques et Interactions". Paris France. Institut Henri Poincaré. (2006)

Carbone A*, Képès F, Zinovyev A. Codon bias signatures, organization of microorganisms in codon space, and lifestyle. Mol Biol Evol. 22(3), pp.547-61 (2005).

Carbone A*, Pierce N (Eds.)DNA Computing. Proceedings of the 11th International Workshop on DNA Computing - DNA11. London (ON, Canada). LNCS 3892, Springer. (2005).

Carbone A*, Madden R. Insights on the evolution of metabolic networks of unicellular translationally biased organisms from transcriptomic data and sequence analysis. J Mol Evol. 61(4), pp.456-69 (2005).

Carbone A*. Pathways of deduction. Geometries of nature, living systems, human cognition - New Interactions of Mathematics with Natural Sciences and Humanities. (2005).

Carbone A*. Revisiting the codon adaptation index from a whole-genome perspective: gene expression, codon bias, and metabolic networks in the context of genomes comparison. Handelingen van de Koninklijke Vlaamse Academie van Belgie voor Wetenschappen en Kunsten. (2005).

Carbone A*. SPAZIO DEI GENI, SPAZIO DEI GENOMI E DETERMINAZIONE DI UN GENOMA MINIMALE. Annals of the Centro di Ricerca Matematica Ennio de Giorgi, Scuola Normale di Pisa. (2005).

Carbone A*, Mao C, Constantinou PE, Ding B, Kopatsch J, Sherman WB, Seeman NC. 3D fractal DNA assembly from coding, geometry and protection. Natural Computing. 3, pp.235–252 (2004).

Carbone A*, Seeman NC Molecular tiling and DNA self-assembly. in Aspects of Molecular Computing. Springer. pp. 61–83 (2004)

Carbone A*, Seeman NC. Coding and geometrical shapes in nanostructures: a fractal DNA-assembly. Natural Computing. 2, pp.133–151 (2003).

Carbone A*, Zinovyev A, Képès F. Codon adaptation index as a measure of dominating codon bias. Bioinformatics. 19(16), pp.2005-15 (2003).

Carbone A* Cooperativity and symmetry at biological scales. in GROUP-24: Physical and Mathematical Aspects of Symmetries (Proceedings of the 24th International Colloquium on Group Theoretical Methods in Physics, Paris, 15-20 Juillet 2002), Institute of Physics. Conference Series Number 173, Bristol and Philadelphia. Institute of Physics Publishing. pp. 51-60 (2003)

Carbone A*, Gromov M. Functional labels and syntactic entropy on DNA strings and proteins. Theoretical computer science. 303, pp.35–51 (2003).

Bourgine P, Carbone A*, Gromov M, Képès F (Eds.)Macromolecular Interplay and Traffic on DNA. ComPlexUs. Basel. S. Karger AG. (2003).

Bourgine P, Carbone A*, Gromov M, Képès F (Eds.)Macromolecular Networks, a collection of articles on the theme. ComPlexUs. Kluwer. (2003).

Mishra B, Daruwala R-S, Zhou Y, Ugel N, Policriti A, Antoniotti M, Paxia S, Rejali M, Rudra A, Cherepinsky V, Silver N, Casey W, Piazza C, Simeoni M, Barbano P, Spivak M, Feng J, Gill O, Venkatesh M, Cheng F, Sun B, Ioniata I, Anantharaman T, E Hubbard JAlbert, Pnueli A, Harel D, Chandru V, Hariharan R, Wigler M, Park F, Lin S-C, Lazebnik Y, Winkler F, Cantor CR, Carbone A*, Gromov M. A sense of life: computational and experimental investigations with models of biochemical and evolutionary processes. OMICS. 7(3), pp.253-68 (2003).

Carbone A*, Seeman NC. Circuits and programmable self-assembling DNA structures. Proc Natl Acad Sci U S A. 99(20), pp.12577-82 (2002).

Carbone A*, Seeman NC. A route to fractal DNA-assembly. Natural Computing. 1, pp.469–480 (2002).

Gromov M, Carbone A*. Mathematical slices of molecular biology. La Gazette des Mathématiciens, Société Mathématique de France, special edition. pp.11-80 (2001).

Carbone A*, Gromov M, Prusinkiewicz P. Pattern formation in biology, vision and dynamics. World Scientific Publishing Company. , (2000).