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Gomes PDa Silva F, Panel N, Laine E, Pascutti PGelado, Solary E, Tchertanov L. Differential Effects of CSF-1R D802V and KIT D816V Homologous Mutations on Receptor Tertiary Structure and Allosteric Communication. PLOS ONE. 9(5), (2014). |
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Carbone A* Extracting Coevolving Characters from a Tree of Species. in Discrete and Topological Models in Molecular Biology. Springer Berlin Heidelberg. pp. 45-65 (2014) |
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Mathelier A, Carbone A*. Predicted human structural clusters of miRNAs target cancer genes. Atlas Genet Cytogenet Oncol Haematol. (2014). |
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Mirauta B, Nicolas P, Richard H. Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models. Bioinformatics. 30(10), pp.1409-16 (2014). |
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de Beauchêne IChauvot, Allain A, Panel N, Laine E, Trouvé A, Dubreuil P, Tchertanov L. Hotspot mutations in KIT receptor differentially modulate its allosterically coupled conformational dynamics: impact on activation and drug sensitivity. PLoS Comput Biol. 10(7), pp.e1003749 (2014). |
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Rogato A, Richard H, Sarazin A, Voss B, Cheminant Navarro S, Champeimont R, Navarro L, Carbone A*, Hess WR, Falciatore A. The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum. BMC Genomics. 15, pp.698 (2014). |
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Sarti E, Zamuner S, Cossio P, Laio A, Seno F, Trovato A. BACHSCORE. A tool for evaluating efficiently and reliably the quality of large sets of protein structures. Computer Physics Communications. 184(12), pp.2860 - 2865 (2013). |
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Drillon G, Carbone A*, Fischer G. Combinatorics of chromosomal rearrangements based on synteny blocks and synteny packs. Journal of Logic and Computation. 23, pp.815–838 (2013). |
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Laine E, Carbone A* Identification of Protein Interaction Partners from Shape Complementarity Molecular Cross-Docking. in IEEE International Conference on Image Analysis and Processing (ICIAP) 2013 Workshops, LNCS 8158. Springer. pp. 318–325 (2013) |
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Mirauta B, Nicolas P, Richard H Pardiff: Inference of Differential Expression at Base-Pair Level from RNA-Seq Experiments. in IEEE International Conference on Image Analysis and Processing (ICIAP) 2013 Workshops, LNCS 8158. Springer. pp. 418–427 (2013) |
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Mathelier A, Carbone A*. Large scale chromosomal mapping of human microRNA structural clusters. Nucleic Acids Res. 41(8), pp.4392-408 (2013). |
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Lopes A, Sacquin-Mora S, Dimitrova V, Laine E, Ponty Y, Carbone A*. Protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary information. PLoS Comput Biol. 9(12), pp.e1003369 (2013). |
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Dib L, Carbone A*. Protein Fragments: Functional and Structural Roles of Their Coevolution Networks. PLoS ONE. 7(11), pp.e48124 (2012). |
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Dib L, Carbone A*. CLAG: an unsupervised non hierarchical clustering algorithm handling biological data. BMC Bioinformatics. 13, pp.194 (2012). |
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Laine E, Auclair C, Tchertanov L. Allosteric communication across the native and mutated KIT receptor tyrosine kinase. PLoS Comput Biol. 8(8), pp.e1002661 (2012). |
