Igor Rouzine

Barlukova A, Rouzine IM. The evolutionary origin of the universal distribution of mutation fitness effect. PLoS Comput Biol. 17(3), (2021).

Pedruzzi G, IM Rouzine. An evolution-based high-fidelity method of epistasis measurement: Theory and application to influenza. PLOS PathogensPLOS Pathogens. 17(6), pp.e1009669 - (2021).

Shirogane Y, Rousseau E, Voznica J, Xiao Y, Su W, Catching A, Whitfield ZJ, Rouzine IM, Bianco S, Andino R. Experimental and mathematical insights on the interactions between poliovirus and a defective interfering genome. bioRxiv. (2021).

Rouzine IM. An evolutionary model of progression to AIDS. Microorganisms 2020. 8(11), (2020).

Rouzine IM Mathematical models of evolution. One-locus theory, multi-locus theory, and applications to virus evolution. in Series in Mathematics and Life Sciences. Edited by: Anna Marciniak-Czochra, Benoît Perthame and Jean-Philippe Vert. De Gruyter. (2020)

Pedruzzi G, Rouzine IM. Epistasis detectably alters correlations between genomic sites in a narrow parameter window. PLOS ONE. 14, pp.1-16 (2019).

Rouzine* IM, Rozhnova G. Antigenic evolution of viruses in host populations. PLoS Pathogens. 14, pp.e1007291 (2018).

Pedruzzi G, Barlukova A, Rouzine* IM. Evolutionary footprint of epistasis. PLOS Computational Biology. 14, pp.e1006426 (2018).

Lidsky PV, Andino R, IM Rouzine. Variability in viral pathogenesis: modeling the dynamic of acute and persistent infections. Curr Opin Virol. 23, pp.120-124 (2017).

Rast LI, IM Rouzine, Rozhnova G, Bishop L, Weinberger AD, Weinberger LS. Conflicting Selection Pressures Will Constrain Viral Escape from Interfering Particles: Principles for Designing Resistance-Proof Antivirals. PLoS Comput Biol. 12(5), pp.e1004799 (2016).

Xiao Y, IM Rouzine, Bianco S, Acevedo A, Goldstein EFaul, Farkov M, Brodsky L, Andino R. RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence. Cell Host Microbe. 19(4), pp.493-503 (2016).

IM Rouzine, Weinberger AD, Weinberger LS. An evolutionary role for HIV latency in enhancing viral transmission. Cell. 160(5), pp.1002-12 (2015).

Razooky BS, Pai A, Aull K, IM Rouzine, Weinberger LS. A hardwired HIV latency program. Cell. 160(5), pp.990-1001 (2015).

IM Rouzine, Coffin JM, Weinberger LS. Fifteen years later: hard and soft selection sweeps confirm a large population number for HIV in vivo. PLoS Genet. 10(2), pp.e1004179 (2014).

Batorsky R, Sergeev RA, IM Rouzine. The route of HIV escape from immune response targeting multiple sites is determined by the cost-benefit tradeoff of escape mutations. PLoS Comput Biol. 10(10), pp.e1003878 (2014).

IM Rouzine, Razooky BS, Weinberger LS. Stochastic variability in HIV affects viral eradication. Proc Natl Acad Sci U S A. 111(37), pp.13251-2 (2014).

IM Rouzine, Weinberger LS. Design requirements for interfering particles to maintain coadaptive stability with HIV-1. J Virol. 87(4), pp.2081-93 (2013).

IM Rouzine, Weinberger LS. The quantitative theory of within-host viral evolution. Journal of Statistical Mechanics: Theory and Experiment. 2013, pp.P01009 (2013).

IM Rouzine, Weinberger LS. Reply to “Coadaptive Stability of Interfering Particles with HIV-1 When There Is an Evolutionary Conflict”. Journal of virology. 87, pp.9960–9962 (2013).

Good BH, IM Rouzine, Balick DJ, Hallatschek O, Desai MM. Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations. Proc Natl Acad Sci U S A. 109(13), pp.4950-5 (2012).

Batorsky R, Kearney MF, Palmer SE, Maldarelli F, IM Rouzine, Coffin JM. Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection. Proc Natl Acad Sci U S A. 108(14), pp.5661-6 (2011).

Sergeev RA, Batorsky RE, IM Rouzine. Model with two types of CTL regulation and experiments on CTL dynamics. J Theor Biol. 263(3), pp.369-84 (2010).

IM Rouzine, Coffin JM. Multi-site adaptation in the presence of infrequent recombination. Theoretical population biology. 77, pp.189–204 (2010).

Dutta RN, IM Rouzine, Smith SD, Wilke CO, Novella IS. Rapid adaptive amplification of preexisting variation in an RNA virus. J Virol. 82(9), pp.4354-62 (2008).

Brunet E, IM Rouzine, Wilke CO. The stochastic edge in adaptive evolution. Genetics. 179(1), pp.603-20 (2008).