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Francesco Oteri
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Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis. Cell Reports. (In Press).
. Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins. PLoS Comp Biol. 19(3), pp.e1011010 (2023).
. Machine-learning-assisted Monte Carlo fails at sampling computationally hard problems. Machine Learning: Science and Technology. 4, pp.010501 (2023).
. Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association. Environ Res. 207, pp.112183 (2022).
. Crystal structure of chloroplast fructose-1,6-bisphosphate aldolase from the green alga Chlamydomonas reinhardtii. Journal of Structural Biology. (2022).
. Deciphering polymorphism in 61,157 Escherichia coli genomes via epistatic sequence landscapes. Nature Communications. 13(1), pp.4030 (2022).
. Deep Local Analysis evaluates protein docking conformations with locally oriented cubes. Bioinformatics. (2022).
. Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes. Proceedings of the National Academy of Sciences. 119, pp. e2113118119 (2022).
. From complete cross-docking to partners identification and binding sites predictions. PLOS Computational Biology. 18(1), (2022).
. iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families. Nucleic Acids Research. (2022).
. A large disordered region confers a wide spanning volume to vertebrate Suppressor of Fused as shown in a trans-species solution study. Journal of Structural Biology. pp.107853 (2022).
. Multiple probabilistic models extract features from protein sequence data and resolve functional diversity of very different protein families. Molecular Biology and Evolution. 39(4), (2022).
. The Polo kinase Cdc5 is regulated at multiple levels in the adaptation response to telomere dysfunction. Genetics. (2022).
. Soft disorder modulates the assembly path of protein complexes. PLoS Comput Biol. 18(11), pp.e1010713 (2022).
. Structure and Function of a Dehydrating Condensation Domain in Nonribosomal Peptide Biosynthesis. Journal of the American Chemical Society. 144(31), pp.14057 - 14070 (2022).
. adabmDCA: adaptive Boltzmann machine learning for biological sequences. BMC Bioinformatics. 22(1), pp.528 (2021).
. Adaptation to DNA damage as a bet-hedging mechanism in a fluctuating environment. R Soc Open Sci. 8(8), pp.210460 (2021).
. Architecture and evolution of subtelomeres in the unicellular green alga Chlamydomonas reinhardtii. Nucleic Acids Res. pp.2021.01.29.428817 (2021).
. Assessing conservation of alternative splicing with evolutionary splicing graphs. Genome Res. 31(8), pp.1462-1473 (2021).
. The ATG4 protease integrates redox and stress signals to regulate autophagy. Journal of Experimental Botany. 72, pp.3340-3351 (2021).
. Atypical Iron-Sulfur Cluster Binding, Redox Activity and Structural Properties of Chlamydomonas reinhardtii Glutaredoxin 2. Antioxidants. 10, pp.803 (2021).
. The budding yeast life cycle: More complex than anticipated?. Yeast. 38(1), pp.5-11 (2021).
. Chapter Three - Scientific contributions of Pierre Gadal and his lab—A tribute to Pierre Gadal (1938–2019). in Past, Current and Future Topics. 100, Academic Press. pp. 41-127 (2021)
The complexity of protein interactions unravelled from structural disorder. PLoS Computational Biology. 17(1), (2021).
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